all options
[  buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Source: fasttree  ]

Пакунок: fasttree (2.1.11-2)

Links for fasttree

Screenshot

Debian Resources:

Download Source Package fasttree:

Maintainers:

External Resources:

Similar packages:

phylogenetic trees from alignments of nucleotide or protein sequences

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.

FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").

This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).

Інші пакунки пов'язані з fasttree

  • depends
  • recommends
  • suggests
  • enhances

Завантажити fasttree

Завантаження для всіх доступних архітектур
Архітектура Розмір пакунка Розмір після встановлення Файли
amd64 176.6 kB483.0 kB [список файлів]
arm64 167.5 kB465.0 kB [список файлів]
armel 172.2 kB509.0 kB [список файлів]
armhf 164.9 kB385.0 kB [список файлів]
i386 178.9 kB517.0 kB [список файлів]
mips64el 171.5 kB527.0 kB [список файлів]
mipsel 171.8 kB515.0 kB [список файлів]
ppc64el 181.9 kB635.0 kB [список файлів]
s390x 166.4 kB493.0 kB [список файлів]