Paket: python3-shasta (0.12.0-1 ve diğerleri)

[ Kaynak: shasta  ]

nanopore whole genome assembly (dynamic library)

De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells.

Computational methods used by the Shasta assembler include:

 * Using a run-length representation of the read sequence. This makes
   the assembly process more resilient to errors in homopolymer
   repeat counts, which are the most common type of errors in Oxford
   Nanopore reads.

 * Using in some phases of the computation a representation of the read
   sequence based on markers, a fixed subset of short k-mers (k ≈ 10).

Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers.

This package contains the dynamic library that can be interfaced and imported within Python.

python3-shasta ile İlgili Diğer Paketler

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  ya da libblas.so.3

  sanal paketi sağlayan libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  program options library for C++

• dep: libboost-serialization1.83.0 (>= 1.83.0)

  serialization library for C++

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 3.0) [arm64]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [amd64]

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  ya da liblapack.so.3

  sanal paketi sağlayan liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libpng16-16t64 (>= 1.6.2)

  PNG library - runtime (version 1.6)

• dep: libpython3.12t64 (>= 3.12.1)

  Shared Python runtime library (version 3.12)

• dep: libspoa7.0.0 (>= 4.0.5) [amd64]

  SIMD partial order alignment library

  dep: libspoa7.0.0 (>= 4.1.4) [arm64]

• dep: libstdc++6 (>= 13.1) [amd64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [arm64]

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: python3 (<< 3.13)

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (>= 3.12~)

python3-shasta indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	0.12.0-1+b1	2.130,0 kB	8.057,0 kB	[dosya listesi]
arm64	0.12.0-1+b2	1.915,1 kB	7.742,0 kB	[dosya listesi]