Balík: python3-shasta (0.12.0-1 a iné)

[ Zdroj: shasta  ]

nanopore whole genome assembly (dynamic library)

De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells.

Computational methods used by the Shasta assembler include:

 * Using a run-length representation of the read sequence. This makes
   the assembly process more resilient to errors in homopolymer
   repeat counts, which are the most common type of errors in Oxford
   Nanopore reads.

 * Using in some phases of the computation a representation of the read
   sequence based on markers, a fixed subset of short k-mers (k ≈ 10).

Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers.

This package contains the dynamic library that can be interfaced and imported within Python.

Ostatné balíky súvisiace s balíkom python3-shasta

• dep: libblas3

  referenčné implementácie základnej lineárnej algebry - zdieľaná knižnica

  alebo libblas.so.3

  virtuálny balík poskytovaný balíkom libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  knižnica volieb programu pre C++

• dep: libboost-serialization1.83.0 (>= 1.83.0)

  knižnica na serializáciu pre C++

• dep: libc6 (>= 2.38)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 3.0) [arm64]

  podporná knižnica GCC

  dep: libgcc-s1 (>= 3.4) [amd64]

• dep: liblapack3

  knižnica rutín lineárnej algebry, verzia 3 - zdieľaná knižnica

  alebo liblapack.so.3

  virtuálny balík poskytovaný balíkom liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libpng16-16t64 (>= 1.6.2)

  knižnica PNG - dynamická knižnica (verzia 1.6)

• dep: libpython3.12t64 (>= 3.12.1)

  Shared Python runtime library (version 3.12)

• dep: libspoa7.0.0 (>= 4.0.5) [amd64]

  SIMD partial order alignment library

  dep: libspoa7.0.0 (>= 4.1.4) [arm64]

• dep: libstdc++6 (>= 13.1)

  štandardná knižnica C++ GNU v3

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: python3 (<< 3.13)

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (>= 3.12~)

Stiahnuť python3-shasta

Stiahnuť pre všetky dostupné architektúry

Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	0.12.0-1+b1	2,130.0 kB	8,057.0 kB	[zoznam súborov]
arm64	0.12.0-1+b1	1,866.6 kB	7,704.0 kB	[zoznam súborov]