Paket: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2 ve diğerleri)

[ Kaynak: ngmlr  ]

CoNvex Gap-cost alignMents for Long Reads

Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.

ngmlr ile İlgili Diğer Paketler

• dep: libc6 (>= 2.34) [arm64 değil]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.38) [arm64]

• dep: libgcc-s1 (>= 3.0) [armel, armhf, i386, riscv64 değil]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libssw0 (>= 1.1)

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 11) [arm64, riscv64 değil]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [arm64, riscv64]

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

ngmlr indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	0.2.7+git20210816.a2a31fb+dfsg-2+b1	673,7 kB	1.157,0 kB	[dosya listesi]
arm64	0.2.7+git20210816.a2a31fb+dfsg-2+b2	655,1 kB	1.173,0 kB	[dosya listesi]
armel	0.2.7+git20210816.a2a31fb+dfsg-2+b1	648,7 kB	1.172,0 kB	[dosya listesi]
armhf	0.2.7+git20210816.a2a31fb+dfsg-2+b1	649,2 kB	1.044,0 kB	[dosya listesi]
i386	0.2.7+git20210816.a2a31fb+dfsg-2+b1	680,7 kB	1.184,0 kB	[dosya listesi]
mips64el	0.2.7+git20210816.a2a31fb+dfsg-2+b1	657,3 kB	1.260,0 kB	[dosya listesi]
ppc64el	0.2.7+git20210816.a2a31fb+dfsg-2+b1	677,5 kB	1.301,0 kB	[dosya listesi]
riscv64	0.2.7+git20210816.a2a31fb+dfsg-2+b1	669,3 kB	1.077,0 kB	[dosya listesi]
s390x	0.2.7+git20210816.a2a31fb+dfsg-2+b1	655,1 kB	1.173,0 kB	[dosya listesi]