Paket: seqan-raptor (3.0.1+ds-2) [debports]

[ Kaynak:  ]

pre-filter for querying very large collections of nucleotide sequences

Raptor is a system for approximately searching many queries such as next-generation sequencing reads or transcripts in large collections of nucleotide sequences. Raptor uses winnowing minimizers to define a set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) as a set membership data structure and probabilistic thresholding for minimizers. This approach allows compression and partitioning of the IBF to enable the effective use of secondary memory.

seqan-raptor ile İlgili Diğer Paketler

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 4.3)

  GCC support library

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libxxhash0 (>= 0.6.5)

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• dep: libyaml-cpp0.7 (>= 0.7.0)

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• dep: zlib1g (>= 1:1.1.4)

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• sug: cwl-runner

  sanal paketi sağlayan cwltool, toil

seqan-raptor indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
sparc64 (resmi olmayan port)	473,3 kB	2.111,0 kB	[dosya listesi]