Paket: libfreecontact0t64 (1.0.21-14 ve diğerleri)

[ Kaynak: freecontact  ]

fast protein contact predictor library

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the shared library implementing freecontact.

libfreecontact0t64 ile İlgili Diğer Paketler

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  ya da libblas.so.3

  sanal paketi sağlayan libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.34) [alpha, ia64, sh4 değil]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.39) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [armel, armhf, hppa, ia64, m68k değil]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgfortran5 (>= 8)

  Runtime library for GNU Fortran applications

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  ya da liblapack.so.3

  sanal paketi sağlayan libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

libfreecontact0t64 indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	1.0.21-14	75,4 kB	219,0 kB	[dosya listesi]
amd64	1.0.21-14	81,6 kB	206,0 kB	[dosya listesi]
arm64	1.0.21-14	72,9 kB	218,0 kB	[dosya listesi]
armel	1.0.21-14	61,5 kB	165,0 kB	[dosya listesi]
armhf	1.0.21-14	61,7 kB	129,0 kB	[dosya listesi]
hppa (resmi olmayan port)	1.0.21-14+b1	79,7 kB	202,0 kB	[dosya listesi]
i386	1.0.21-14	67,8 kB	181,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	1.0.21-13.1+b1	97,4 kB	319,0 kB	[dosya listesi]
m68k (resmi olmayan port)	1.0.21-14	60,0 kB	161,0 kB	[dosya listesi]
mips64el	1.0.21-14	68,7 kB	224,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	1.0.21-14	77,3 kB	218,0 kB	[dosya listesi]
ppc64el	1.0.21-14	87,3 kB	218,0 kB	[dosya listesi]
riscv64	1.0.21-14	74,2 kB	149,0 kB	[dosya listesi]
s390x	1.0.21-14	70,3 kB	202,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	1.0.21-14	80,5 kB	217,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	1.0.21-14	62,5 kB	1.053,0 kB	[dosya listesi]
x32 (resmi olmayan port)	1.0.21-14	81,8 kB	201,0 kB	[dosya listesi]