Paket: plasmidseeker (1.0+dfsg-1)

[ Kaynak: plasmidseeker  ]

identification of known plasmids from whole-genome sequencing reads

PlasmidSeeker is a k-mer based program for the identification of known plasmids from bacterial whole genome sequencing reads.

PlasmidSeeker that enables the detection of plasmids from bacterial WGS data without read assembly. The PlasmidSeeker algorithm is based on k-mers and uses k-mer abundance to distinguish between plasmid and bacterial sequences. The performance of PlasmidSeeker was tested on a set of simulated and real bacterial WGS samples, resulting in 100% sensitivity and 99.98% specificity.

plasmidseeker ile İlgili Diğer Paketler

• dep: genometester (>= 4.0+git20180508.a9c14a6+dfsg)

  toolkit for performing set operations on k-mer lists

plasmidseeker indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	23,9 kB	90,0 kB	[dosya listesi]
arm64	23,9 kB	90,0 kB	[dosya listesi]
armhf	23,9 kB	90,0 kB	[dosya listesi]
i386	23,9 kB	90,0 kB	[dosya listesi]