Paket: blixem (4.44.1+dfsg-3)

[ Kaynak: seqtools  ]

interactive browser of sequence alignments

Blixem is an interactive browser of sequence alignments that have been stacked up in a "master-slave" multiple alignment; it is not a 'true' multiple alignment but a 'one-to-many' alignment.

 * Overview section showing the positions of genes and alignments around
   the alignment window
 * Detail section showing the actual alignment of protein or nucleotide
   sequences to the genomic DNA sequence.
 * View alignments against both strands of the reference sequence.
 * View sequences in nucleotide or protein mode; in protein mode, Blixem
   will display the three-frame translation of the reference sequence.
 * Residues are highlighted in different colours depending on whether
   they are an exact match, conserved substitution or mismatch.
 * Gapped alignments are supported, with insertions and deletions being
   highlighted in the match sequence.
 * Matches can be sorted and filtered.
 * SNPs and other variations can be highlighted in the reference
   sequence.
 * Poly(A) tails can be displayed and poly(A) signals highlighted in the
   reference sequence.

Etiketler: Arayüz Araç Takımı: GTK

blixem ile İlgili Diğer Paketler

• dep: libatk1.0-0 (>= 1.12.4)

  ATK accessibility toolkit

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libcairo2 (>= 1.2.4)

  Cairo 2D vector graphics library

• dep: libcurl4 (>= 7.16.2)

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libfontconfig1 (>= 2.12.6)

  generic font configuration library - runtime

• dep: libfreetype6 (>= 2.2.1)

  FreeType 2 font engine, shared library files

• dep: libgbtools0

  library for visualising sequence alignments

• dep: libgcc1 (>= 1:3.0) [armhf değil]

  GCC support library

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libgdk-pixbuf2.0-0 (>= 2.22.0)

  GDK Pixbuf library

• dep: libglib2.0-0 (>= 2.35.9)

  GLib library of C routines

• dep: libgtk2.0-0 (>= 2.14.0)

  GTK+ graphical user interface library

• dep: libjsoncpp1 (>= 1.7.4)

  library for reading and writing JSON for C++

• dep: libpango-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libpangocairo-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libpangoft2-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libsqlite3-0 (>= 3.5.9)

  SQLite 3 shared library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

blixem indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	342,2 kB	1.147,0 kB	[dosya listesi]
arm64	314,0 kB	1.115,0 kB	[dosya listesi]
armhf	292,9 kB	739,0 kB	[dosya listesi]
i386	362,8 kB	1.285,0 kB	[dosya listesi]