Paket: ariba (2.13.3+ds-1)

[ Kaynak: ariba  ]

Antibiotic Resistance Identification By Assembly

ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.

Etiketler: Biyoloji: Nükleik Asitler, Alan: Biyoloji, field::biology:bioinformatics, implemented-in::python, Kullanıcı Arayüzü: Komut Satırı, Rol: role::program, scope::application, Amaç: Analiz

ariba ile İlgili Diğer Paketler

• dep: bowtie2 (>= 2.1.0)

  ultrafast memory-efficient short read aligner

• dep: cd-hit

  suite of programs designed to quickly group sequences

• dep: fastaq (>= 3.12.0)

  FASTA and FASTQ file manipulation tools

• dep: libc6 (>= 2.14)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libfml0 (>= 0.1-4~)

  library for assembling Illumina short reads in small regions

• dep: libgcc1 (>= 1:3.0)

  GCC support library

• dep: libminimap0

  library for approximate mapping of long biosequences

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: mash

  fast genome and metagenome distance estimation using MinHash

• dep: mummer

  Efficient sequence alignment of full genomes

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.8)

  dep: python3 (>= 3.7~)

• dep: python3-biopython

  Python library for bioinformatics (implemented in Python 3)

• dep: python3-bs4

  error-tolerant HTML parser for Python 3

• dep: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab (Python 3)

• dep: python3-pymummer (>= 0.10.2)

  Python 3 interface to MUMmer

• dep: python3-pysam (>= 0.9.1)

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-tk

  Tkinter - Writing Tk applications with Python 3.x

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

ariba indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	1.639,6 kB	17.444,0 kB	[dosya listesi]