Paket: python3-dna-jellyfish (2.3.0-10)

[ Kaynak: jellyfish  ]

count k-mers in DNA sequences (Python bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Python bindings of jellyfish.

python3-dna-jellyfish ile İlgili Diğer Paketler

• dep: libc6 (>= 2.17)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libjellyfish-2.0-2 (>= 2.3.0)

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.10)

  dep: python3 (>= 3.9~)

python3-dna-jellyfish indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
ppc64el	56,4 kB	237,0 kB	[dosya listesi]