Paket: idba-extra (1.1.3-7)

[ Kaynak: idba  ]

iterative De Bruijn Graph short read assemblers (extra tools)

IDBA stands for iterative de Bruijn graph assembler. In computational sequence biology, an assembler solves the puzzle coming from large sequencing machines that feature many gigabytes of short reads from a large genome.

This package provides several flavours of the IDBA assembler, as they all share the same source tree but serve different purposes and evolved over time.

IDBA is the basic iterative de Bruijn graph assembler for second-generation sequencing reads. IDBA-UD, an extension of IDBA, is designed to utilize paired-end reads to assemble low-depth regions and use progressive depth on contigs to reduce errors in high-depth regions. It is a generic purpose assembler and especially good for single-cell and metagenomic sequencing data. IDBA-Hybrid is another update version of IDBA-UD, which can make use of a similar reference genome to improve assembly result. IDBA-Tran is an iterative de Bruijn graph assembler for RNA-Seq data.

This package ships extra tools for using idba in specific situations.

idba-extra ile İlgili Diğer Paketler

• dep: idba

  iterative De Bruijn Graph short read assemblers

• dep: libatomic1 (>= 4.8) [mipsel]

  support library providing __atomic built-in functions

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 3.0) [armel, armhf, i386, mipsel değil]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

idba-extra indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	398,8 kB	2.543,0 kB	[dosya listesi]
arm64	346,3 kB	2.163,0 kB	[dosya listesi]
armel	337,2 kB	2.028,0 kB	[dosya listesi]
armhf	349,5 kB	1.516,0 kB	[dosya listesi]
i386	432,0 kB	2.632,0 kB	[dosya listesi]
mips64el	406,8 kB	3.061,0 kB	[dosya listesi]
mipsel	422,8 kB	2.921,0 kB	[dosya listesi]
ppc64el	398,4 kB	3.391,0 kB	[dosya listesi]
s390x	359,3 kB	2.563,0 kB	[dosya listesi]