Pakket: idba-extra (1.1.3-7)

[ Bron: idba  ]

iterative De Bruijn Graph short read assemblers (extra tools)

IDBA stands for iterative de Bruijn graph assembler. In computational sequence biology, an assembler solves the puzzle coming from large sequencing machines that feature many gigabytes of short reads from a large genome.

This package provides several flavours of the IDBA assembler, as they all share the same source tree but serve different purposes and evolved over time.

IDBA is the basic iterative de Bruijn graph assembler for second-generation sequencing reads. IDBA-UD, an extension of IDBA, is designed to utilize paired-end reads to assemble low-depth regions and use progressive depth on contigs to reduce errors in high-depth regions. It is a generic purpose assembler and especially good for single-cell and metagenomic sequencing data. IDBA-Hybrid is another update version of IDBA-UD, which can make use of a similar reference genome to improve assembly result. IDBA-Tran is an iterative de Bruijn graph assembler for RNA-Seq data.

This package ships extra tools for using idba in specific situations.

Andere aan idba-extra gerelateerde pakketten

• dep: idba

  iterative De Bruijn Graph short read assemblers

• dep: libatomic1 (>= 4.8) [mipsel]

  support library providing __atomic built-in functions

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, i386, mipsel]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

idba-extra downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	398,8 kB	2.543,0 kB	[overzicht]
arm64	346,3 kB	2.163,0 kB	[overzicht]
armel	337,2 kB	2.028,0 kB	[overzicht]
armhf	349,5 kB	1.516,0 kB	[overzicht]
i386	432,0 kB	2.632,0 kB	[overzicht]
mips64el	406,8 kB	3.061,0 kB	[overzicht]
mipsel	422,8 kB	2.921,0 kB	[overzicht]
ppc64el	398,4 kB	3.391,0 kB	[overzicht]
s390x	359,3 kB	2.563,0 kB	[overzicht]