Paket: bowtie2 (2.4.2-2 ve diğerleri)

[ Kaynak: bowtie2  ]

ultrafast memory-efficient short read aligner

is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.

Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes

Etiketler: Biyoloji: Nükleik Asitler, Alan: Biyoloji, field::biology:bioinformatics, implemented-in::c++, Kullanıcı Arayüzü: Komut Satırı, Rol: role::program, use::comparing, Şununla çalışır: Biyolojik Dizi

bowtie2 ile İlgili Diğer Paketler

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64 değil]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [amd64]

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• dep: libtbb2 (>= 2017~U7) [amd64]

  parallelism library for C++ - runtime files

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.2.6)

  compression library - runtime

• sug: bowtie2-examples

  Examples for bowtie2

bowtie2 indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	2.4.2-2+b3	1.310,9 kB	5.305,0 kB	[dosya listesi]
arm64	2.4.2-2+b3	1.234,3 kB	4.591,0 kB	[dosya listesi]
mips64el	2.4.2-2+b2	1.294,0 kB	5.573,0 kB	[dosya listesi]
ppc64el	2.4.2-2+b3	1.386,5 kB	5.563,0 kB	[dosya listesi]