Paket: bamtools (2.5.1+dfsg-9)

[ Kaynak: bamtools  ]

toolkit for manipulating BAM (genome alignment) files

BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research.

BamTools provides both a C++ API for BAM file support as well as a command-line toolkit.

This is the bamtools command-line toolkit.

Available bamtools commands:

 convert  Converts between BAM and a number of other formats
 count    Prints number of alignments in BAM file(s)
 coverage Prints coverage statistics from the input BAM file
 filter   Filters BAM file(s) by user-specified criteria
 header   Prints BAM header information
 index    Generates index for BAM file
 merge    Merge multiple BAM files into single file
 random   Select random alignments from existing BAM file(s), intended more
          as a testing tool.
 resolve  Resolves paired-end reads (marking the IsProperPair flag as needed)
 revert   Removes duplicate marks and restores original base qualities
 sort     Sorts the BAM file according to some criteria
 split    Splits a BAM file on user-specified property, creating a new BAM
          output file for each value found
 stats    Prints some basic statistics from input BAM file(s)

Etiketler: Geliştirildiği dil: C++, Rol: Program

bamtools ile İlgili Diğer Paketler

• dep: libbamtools2.5.1 (>= 2.5.1+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [amd64, arm64, ppc64el değil]

• dep: libgcc-s1 (>= 3.0) [armel, armhf değil]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libjsoncpp24 (>= 1.9.4)

  library for reading and writing JSON for C++

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [armel, armhf değil]

bamtools indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	178,7 kB	598,0 kB	[dosya listesi]
arm64	153,2 kB	534,0 kB	[dosya listesi]
armel	147,1 kB	509,0 kB	[dosya listesi]
armhf	154,9 kB	393,0 kB	[dosya listesi]
i386	190,4 kB	629,0 kB	[dosya listesi]
mips64el	146,2 kB	652,0 kB	[dosya listesi]
mipsel	147,5 kB	635,0 kB	[dosya listesi]
ppc64el	174,3 kB	666,0 kB	[dosya listesi]
s390x	152,2 kB	586,0 kB	[dosya listesi]