Paket: libjellyfish-2.0-dev (2.3.0-10)

[ Kaynak: jellyfish  ]

count k-mers in DNA sequences (development files of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the development files (static library and header files)

Etiketler: Yazılım Geliştirme: Kitaplıklar, Rol: Geliştirme Kitaplığı

libjellyfish-2.0-dev ile İlgili Diğer Paketler

• dep: libjellyfish-2.0-2 (= 2.3.0-10)

  count k-mers in DNA sequences (dynamic library of jellyfish)

libjellyfish-2.0-dev indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
armel	129,1 kB	620,0 kB	[dosya listesi]