Paketti: libjellyfish-2.0-dev (2.3.0-10)

[ Source: jellyfish  ]

count k-mers in DNA sequences (development files of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the development files (static library and header files)

Tagit: Software Development: Kirjastot, Role: Development Library

Muut pakettiin libjellyfish-2.0-dev liittyvät paketit

• dep: libjellyfish-2.0-2 (= 2.3.0-10)

  count k-mers in DNA sequences (dynamic library of jellyfish)

Imuroi libjellyfish-2.0-dev

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
armel	129.1 kt	620.0 kt	[tiedostoluettelo]