Paket: ncbi-epcr (2.3.12-1-10)

[ Källkod: epcr  ]

Tool to test a DNA sequence for the presence of sequence tagged sites

Electronic PCR (e-PCR) is computational procedure that is used to identify sequence tagged sites(STSs), within DNA sequences. e-PCR looks for potential STSs in DNA sequences by searching for subsequences that closely match the PCR primers and have the correct order, orientation, and spacing that could represent the PCR primers used to generate known STSs.

The new version of e-PCR implements a fuzzy matching strategy. To reduce likelihood that a true STS will be missed due to mismatches, multiple discontiguous words may be used instead of a single exact word. Each of this word has groups of significant positions separated by 'wildcard' positions that are not required to match. In addition, it is also possible to allow gaps in the primer alignments.

The main motivation for implementing reverse searching (called Reverse e-PCR) was to make it feasible to search the human genome sequence and other large genomes. The new version of e-PCR provides a search mode using a query sequence against a sequence database.

This program is retired upstream and it is suggested to use Primer-Blast

 https://www.ncbi.nlm.nih.gov/tools/primer-blast/

instead.

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: Utility, Purpose: use::checking, use::searching, Supports Format: Plain Text, Works with: Behöver ett märke till

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Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	169,5 kbyte	518,0 kbyte	[filförteckning]
arm64	156,4 kbyte	626,0 kbyte	[filförteckning]
armel	148,0 kbyte	434,0 kbyte	[filförteckning]
armhf	149,4 kbyte	350,0 kbyte	[filförteckning]
i386	174,4 kbyte	526,0 kbyte	[filförteckning]
mips64el	162,9 kbyte	718,0 kbyte	[filförteckning]
ppc64el	169,6 kbyte	690,0 kbyte	[filförteckning]
riscv64	164,6 kbyte	422,0 kbyte	[filförteckning]
s390x	167,6 kbyte	542,0 kbyte	[filförteckning]