Källkodspaket: pigx-rnaseq (0.1.1-1)
Länkar för pigx-rnaseq
Debianresurser:
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Externa resurser:
Följande binärpaket byggs från detta källkodspaket:
- pigx-rnaseq
- pipeline for checkpointed and distributed RNA-seq analyses
Andra paket besläktade med pigx-rnaseq
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- arkitekturoberoende bygg-beroende
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debhelper-compat
(= 13)
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fastp
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fastqc
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libjs-jquery-datatables
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libjs-jquery-tablesorter
- jQuery flexible client-side table sorting plugin
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megadepth
- computes coverage from BigWig and BAM sequencing files
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- adep:
multiqc
- output integration for RNA sequencing across tools and samples
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- adep:
python3-all
- package depending on all supported Python 3 runtime versions
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- adep:
python3-deeptools
- platform for exploring biological deep-sequencing data
-
- adep:
python3-htseq
- Python3 high-throughput genome sequencing read analysis utilities
-
- adep:
r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
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- adep:
r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
-
- adep:
r-bioc-summarizedexperiment
- BioConductor assay container
-
- adep:
r-bioc-tximport
- transcript-level estimates for biological sequencing
-
- adep:
r-cran-corrplot
- Visualization of a Correlation Matrix
-
- adep:
r-cran-crosstalk
- GNU R inter-widget interactivity for HTML widgets
-
- adep:
r-cran-data.table
- GNU R extension of Data.frame
-
- adep:
r-cran-dt
- GNU R wrapper of the JavaScript library 'DataTables'
-
- adep:
r-cran-ggplot2
- implementation of the Grammar of Graphics
-
- adep:
r-cran-ggrepel
- auto-position non-overlapping text labels in plots
-
- adep:
r-cran-gprofiler2
- Interface to the 'g:Profiler' Toolset
-
- adep:
r-cran-ggpubr
- GNU R ggplot2 based publication ready plots
-
- adep:
r-cran-locfit
- GNU R local regression, likelihood and density estimation
-
- adep:
r-cran-pheatmap
- GNU R package to create pretty heatmaps
-
- adep:
r-cran-plotly
- create interactive web graphics via 'plotly.js' in GNU R
-
- adep:
r-cran-reshape2
- Flexibly reshape data: a reboot of the reshape package
-
- adep:
r-cran-rjson
- GNU R package for converting between R and JSON objects
-
- adep:
r-cran-rlang
- Functions for Base Types and Core R and 'Tidyverse' Features
-
- adep:
r-cran-rmarkdown
- convert R markdown documents into a variety of formats
-
- adep:
r-cran-scales
- Scale functions for visualization
-
- adep:
salmon
- wicked-fast transcript quantification from RNA-seq data
-
- adep:
samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- adep:
snakemake
- pythonic workflow management system
-
- adep:
trim-galore
- automate quality and adapter trimming for DNA sequencing
