原始碼套件：pigx-rnaseq（0.1.1-1）
本原始碼套件構建了以下這些二進位制包：
- pigx-rnaseq
- pipeline for checkpointed and distributed RNA-seq analyses
其他與 pigx-rnaseq 有關的套件
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- adep: debhelper-compat (= 13)
- 套件暫時不可用
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- adep: autoconf-archive
- Autoconf Macro Archive
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- adep: fastp
- Ultra-fast all-in-one FASTQ preprocessor
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- adep: fastqc
- quality control for high throughput sequence data
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- adep: hisat2
- graph-based alignment of short nucleotide reads to many genomes
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- adep: libjs-jquery-datatables
- jQuery plug-in that makes nice tables from different data sources
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- adep: libjs-jquery-tablesorter
- jQuery flexible client-side table sorting plugin
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- adep: megadepth
- computes coverage from BigWig and BAM sequencing files
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- adep: multiqc
- output integration for RNA sequencing across tools and samples
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- adep: python3-all
- package depending on all supported Python 3 runtime versions
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- adep: python3-deeptools
- platform for exploring biological deep-sequencing data
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- adep: python3-htseq
- Python3 high-throughput genome sequencing read analysis utilities
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- adep: r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
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- adep: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
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- adep: r-bioc-summarizedexperiment
- BioConductor assay container
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- adep: r-bioc-tximport
- transcript-level estimates for biological sequencing
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- adep: r-cran-corrplot
- Visualization of a Correlation Matrix
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- adep: r-cran-crosstalk
- GNU R inter-widget interactivity for HTML widgets
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- adep: r-cran-data.table
- GNU R extension of Data.frame
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- adep: r-cran-dt
- GNU R wrapper of the JavaScript library 'DataTables'
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- adep: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- adep: r-cran-ggrepel
- auto-position non-overlapping text labels in plots
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- adep: r-cran-gprofiler2
- Interface to the 'g:Profiler' Toolset
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- adep: r-cran-ggpubr
- GNU R ggplot2 based publication ready plots
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- adep: r-cran-locfit
- GNU R local regression, likelihood and density estimation
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- adep: r-cran-pheatmap
- GNU R package to create pretty heatmaps
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- adep: r-cran-plotly
- create interactive web graphics via 'plotly.js' in GNU R
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- adep: r-cran-reshape2
- Flexibly reshape data: a reboot of the reshape package
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- adep: r-cran-rjson
- GNU R package for converting between R and JSON objects
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- adep: r-cran-rlang
- Functions for Base Types and Core R and 'Tidyverse' Features
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- adep: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- adep: r-cran-scales
- Scale functions for visualization
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- adep: salmon
- wicked-fast transcript quantification from RNA-seq data
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- adep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- adep: snakemake
- pythonic workflow management system
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- adep: trim-galore
- automate quality and adapter trimming for DNA sequencing
Download pigx-rnaseq
| 檔案 | 大小（單位：kB） | MD5 校驗碼 |
|---|---|---|
| pigx-rnaseq_0.1.1-1.dsc | 2。7 kB | 15165df243e3b07c331911ad693b8485 |
| pigx-rnaseq_0.1.1.orig.tar.xz | 4，319。7 kB | 4843fa469087538a12397484788271f5 |
| pigx-rnaseq_0.1.1-1.debian.tar.xz | 15。1 kB | 0b3ce684c84e2301aa18ced7f62a42b4 |
- Debian 套件原始碼倉庫（VCS：Git）
- https://salsa.debian.org/med-team/pigx-rnaseq.git
- Debian 套件原始碼倉庫（可線上瀏覽）
- https://salsa.debian.org/med-team/pigx-rnaseq