Paket: python3-pairix (0.3.8-1 och andra)

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1D/2D indexing and querying with a pair of genomic coordinates

Pairix is a tool for indexing and querying on a block-compressed text file containing pairs of genomic coordinates.

Pairix is a stand-alone C program that was written on top of tabix as a tool for the 4DN-standard pairs file format describing Hi-C data: pairs_format_specification.md

However, Pairix can be used as a generic tool for indexing and querying any bgzipped text file containing genomic coordinates, for either 2D- or 1D- indexing and querying.

For example: given the custom text file below, you want to extract specific lines from the Pairs file further below. An awk command would read the Pairs file from beginning to end. Pairix creates an index and uses it to access the file from a relevant position by taking advantage of bgzf compression, allowing for a fast query on large files.

Andra paket besläktade med python3-pairix

beror

rekommenderar

föreslår

enhances

dep: python3 (<< 3.10) [hppa]

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.13) [ej hppa]

dep: python3 (>= 3.11~) [ia64]

dep: python3 (>= 3.12~) [ej hppa, ia64]

dep: python3 (>= 3.9~) [hppa]

Hämta python3-pairix

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	0.3.8-1	40,4 kbyte	156,0 kbyte	[filförteckning]
amd64	0.3.8-1	40,8 kbyte	119,0 kbyte	[filförteckning]
arm64	0.3.8-1	38,1 kbyte	155,0 kbyte	[filförteckning]
armel	0.3.8-1	35,9 kbyte	106,0 kbyte	[filförteckning]
armhf	0.3.8-1	34,9 kbyte	86,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	0.3.7-4	40,6 kbyte	120,0 kbyte	[filförteckning]
i386	0.3.8-1	44,6 kbyte	126,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	0.3.7-7	54,3 kbyte	353,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	0.3.8-1	35,2 kbyte	106,0 kbyte	[filförteckning]
mips64el	0.3.8-1	38,0 kbyte	162,0 kbyte	[filförteckning]
ppc64el	0.3.8-1	46,5 kbyte	155,0 kbyte	[filförteckning]
riscv64	0.3.8-1	41,1 kbyte	103,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	0.3.8-1	44,6 kbyte	154,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	0.3.8-1	41,0 kbyte	114,0 kbyte	[filförteckning]