Paket: hts-nim-tools (0.2.1-1) [debports]

[ Källkod:  ]

tools biological sequences: bam-filter, count-reads, vcf-check

This package provides several tools that (at least at the time of their creation) provide functionalities beyond the routine provided by samtools and other reverse dependencies of the htslib.

These new tools are

 • bam-filter : filter BAM/CRAM/SAM files with a simple expression language
 • count-reads: count BAM/CRAM reads in regions given in a BED file
 • vcf-check  : check regions of a VCF against a background for missing chunks

and yes, as the name suggests, these tools are all implemented in nim, using the nim-hts (upstream: hts-nim) wrapper for the htslib.

Andra paket besläktade med hts-nim-tools

• dep: libc6 (>= 2.29)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: nim-hts-dev

  wrapper for hts C library

Hämta hts-nim-tools

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
ppc64 (inofficiell anpassning)	155,9 kbyte	981,0 kbyte	[filförteckning]