Paket: python3-pairtools (1.0.3-1 och andra)

[ Källkod: pairtools  ]

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

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• dep: libgcc-s1 (>= 3.0)

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• dep: libstdc++6 (>= 11)

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• dep: python3-click

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• dep: python3-numpy (>= 1:1.25.0)

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• dep: python3-numpy-abi9

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• dep: python3-pysam (>= 0.20.0+ds-3~)

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• dep: python3-scipy

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• dep: python3-yaml

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• sug: python3-pairtools-examples (>= 1.0.2)

  Process sequencing data from a Hi-C experiment (examples)

Hämta python3-pairtools

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
i386	1.0.3-1+b2	193,8 kbyte	797,0 kbyte	[filförteckning]