Paket: glam2 (1064-10 och andra)

[ Källkod: glam2  ]

gapped protein motifs from unaligned sequences

GLAM2 is a software package for finding motifs in sequences, typically amino-acid or nucleotide sequences. A motif is a re-occurring sequence pattern: typical examples are the TATA box and the CAAX prenylation motif. The main innovation of GLAM2 is that it allows insertions and deletions in motifs.

This package includes programs for discovering motifs shared by a set of sequences and finding matches to these motifs in a sequence database, as well as utilities for converting glam2 motifs to standard alignment formats, masking glam2 motifs out of sequences so that weaker motifs can be found, and removing highly similar members of a set of sequences.

The package includes these programs:

 glam2:       discovering motifs shared by a set of sequences;
 glam2scan:   finding matches, in a sequence database, to a motif discovered
              by glam2;
 glam2format: converting glam2 motifs to  standard alignment formats;
 glam2mask:   masking glam2 motifs out of sequences, so that weaker motifs
              can be found;
 glam2-purge: removing highly similar members of a set of sequences.

In this binary package, the fast Fourier algorithm (FFT) was enabled for the glam2 program.

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Searching, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Behöver ett märke till

Andra paket besläktade med glam2

• dep: libc6 (>= 2.34) [ej alpha, ia64, sh4]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.31) [ia64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

  dep: libc6.1 (>= 2.34) [alpha]

• dep: libfftw3-double3 (>= 3.3.10) [ej ia64]

  Library for computing Fast Fourier Transforms - Double precision

  dep: libfftw3-double3 (>= 3.3.5) [ia64]

Hämta glam2

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	1064-10	228,5 kbyte	697,0 kbyte	[filförteckning]
amd64	1064-10	231,0 kbyte	513,0 kbyte	[filförteckning]
arm64	1064-10	223,8 kbyte	633,0 kbyte	[filförteckning]
armel	1064-10	216,7 kbyte	472,0 kbyte	[filförteckning]
armhf	1064-10	213,8 kbyte	404,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	1064-10	219,3 kbyte	477,0 kbyte	[filförteckning]
i386	1064-10	233,7 kbyte	528,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	1064-9	250,9 kbyte	717,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	1064-10	213,6 kbyte	452,0 kbyte	[filförteckning]
mips64el	1064-10	229,4 kbyte	721,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	1064-10	240,3 kbyte	761,0 kbyte	[filförteckning]
ppc64el	1064-10	242,7 kbyte	761,0 kbyte	[filförteckning]
riscv64	1064-10	231,1 kbyte	453,0 kbyte	[filförteckning]
s390x	1064-10	239,7 kbyte	553,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	1064-10	225,7 kbyte	564,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	1064-10	214,4 kbyte	5.374,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	1064-10	230,2 kbyte	500,0 kbyte	[filförteckning]