Paket: libvcflib-tools (1.0.9+dfsg1-3) [debports]
Länkar för libvcflib-tools
Debianresurser:
Hämta källkodspaketet :
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Externa resurser:
- Hemsida [github.com]
Liknande paket:
C++ library for parsing and manipulating VCF files (tools)
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.
vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:
* an API for parsing and operating on records of genomic variation as it can be described by the VCF format, * and a collection of command-line utilities for executing complex manipulations on VCF files.
This package contains several tools using the library.
Andra paket besläktade med libvcflib-tools
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- dep: libc6.1 (>= 2.34)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6.1-udeb
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- dep: libdisorder0 (>= 0.0.2)
- library for entropy measurement of byte streams
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- dep: libfastahack0 (>= 1.0.0+dfsg)
- library for indexing and sequence extraction from FASTA files (lib)
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- dep: libgcc-s1 (>= 3.4)
- GCC stödbibliotek
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- dep: libgomp1 (>= 4.2.1)
- GCC OpenMP (GOMP) support library
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- dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)
- determine similar regions between two strings or genomic sequences (lib)
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- dep: libstdc++6 (>= 13.2.0-7)
- GNU standardbibliotek v3 för C++
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- dep: libtabixpp0 (>= 1.0.0)
- C++ wrapper to tabix indexer
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- dep: libvcflib2 (>= 1.0.9+dfsg1)
- C++ library for parsing and manipulating VCF files
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- dep: libwfa2-0 (>= 2.3.3)
- exact gap-affine algorithm (shared library)
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: r-base-core
- GNU R core of statistical computation and graphics system
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- dep: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- dep: r-cran-gridbase
- GNU R Integration of base and grid graphics
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- dep: r-cran-plyr
- tools for splitting, applying and combining data
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- sug: r-cran-pracma
- practical numerical math functions for GNU R
Hämta libvcflib-tools
Arkitektur | Paketstorlek | Installerad storlek | Filer |
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alpha (inofficiell anpassning) | 613,1 kbyte | 6.870,0 kbyte | [filförteckning] |