Paket: libfastahack0 (1.0.0+dfsg-11) [debports]

[ Källkod:  ]

library for indexing and sequence extraction from FASTA files (lib)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This package contains the dynamic library.

Andra paket besläktade med libfastahack0

• dep: libc6.1 (>= 2.33)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

• dep: libgcc-s1 (>= 3.4)

  GCC stödbibliotek

• dep: libstdc++6 (>= 13.1)

  GNU standardbibliotek v3 för C++

Hämta libfastahack0

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	23,7 kbyte	82,0 kbyte	[filförteckning]