Paketti: libvcflib-tools (1.0.9+dfsg1-3) [debports]

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C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Muut pakettiin libvcflib-tools liittyvät paketit

• dep: libc6.1 (>= 2.34)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 1.0.0+dfsg)

  library for indexing and sequence extraction from FASTA files (lib)

• dep: libgcc-s1 (>= 3.4)

  GCC:n apukirjasto

• dep: libgomp1 (>= 4.2.1)

  GCC OpenMP (GOMP) support library

• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libstdc++6 (>= 13.2.0-7)

  GNU standardi C++ -kirjasto, versio 3

• dep: libtabixpp0 (>= 1.0.0)

  C++ wrapper to tabix indexer

• dep: libvcflib2 (>= 1.0.9+dfsg1)

  C++ library for parsing and manipulating VCF files

• dep: libwfa2-0 (>= 2.3.3)

  exact gap-affine algorithm (shared library)

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-gridbase

  GNU R Integration of base and grid graphics

• dep: r-cran-plyr

  tools for splitting, applying and combining data

• sug: r-cran-pracma

  practical numerical math functions for GNU R

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