Paket: cufflinks (2.2.1+dfsg.1-3 och andra) [non-free]

[ Källkod: cufflinks  ]

Transcript assembly, differential expression and regulation for RNA-Seq

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.

Märken: Biologi: Nucleic Acids, Field: Biologi, field::biology:bioinformatics, implemented-in::c++, Role: Program, Works with: Biological Sequence

Andra paket besläktade med cufflinks

• dep: libboost-serialization1.67.0

  serialization library for C++

• dep: libboost-system1.67.0

  Operating system (e.g. diagnostics support) library

• dep: libboost-thread1.67.0

  portable C++ multi-threading

• dep: libc6 (>= 2.23)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc1 (>= 1:4.0) [amd64, armhf]

  GCC stödbibliotek

  dep: libgcc1 (>= 1:4.2) [i386]

  dep: libgcc1 (>= 1:4.5) [arm64]

• dep: libstdc++6 (>= 5.2)

  GNU standardbibliotek v3 för C++

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: zlib1g (>= 1:1.2.3.3)

  Kompressionsbibliotek - körtidspaket

• enh: tophat

  fast splice junction mapper for RNA-Seq reads

Hämta cufflinks

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	2.2.1+dfsg.1-3+b1	1.467,3 kbyte	10.248,0 kbyte	[filförteckning]
arm64	2.2.1+dfsg.1-3+b1	1.365,4 kbyte	9.782,0 kbyte	[filförteckning]
armhf	2.2.1+dfsg.1-3+b1	1.079,9 kbyte	6.034,0 kbyte	[filförteckning]
i386	2.2.1+dfsg.1-3+b1	1.494,9 kbyte	10.392,0 kbyte	[filförteckning]