Paket: r-bioc-variantannotation (1.36.0-1)

[ Källkod: r-bioc-variantannotation  ]

BioConductor annotation of genetic variants

This BioConductor package provides R functions to annotate variants, compute amino acid coding changess and to predict coding outcomes.

Andra paket besläktade med r-bioc-variantannotation

• dep: libc6 (>= 2.15) [ej arm64, ppc64el]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

• dep: libcurl4 (>= 7.18.0)

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: r-api-4.0

  virtuellt paket som tillhandahålls av r-base-core

• dep: r-api-bioc-3.12

  virtuellt paket som tillhandahålls av r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-annotationdbi (>= 1.27.9)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.15.3)

  generic functions for Bioconductor

• dep: r-bioc-biostrings (>= 2.57.2)

  GNU R string objects representing biological sequences

• dep: r-bioc-bsgenome (>= 1.47.3)

  BioConductor infrastructure for Biostrings-based genome data packages

• dep: r-bioc-genomeinfodb (>= 1.15.2)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicfeatures (>= 1.31.3)

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges (>= 1.41.5)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.23.9)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-matrixgenerics

  S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

• dep: r-bioc-rhtslib

  HTSlib high-throughput sequencing library as GNU R package

• dep: r-bioc-rsamtools (>= 1.99.0)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-rtracklayer (>= 1.39.7)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.27.12)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment (>= 1.19.5)

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• dep: r-bioc-xvector (>= 0.29.2)

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• dep: r-bioc-zlibbioc

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• dep: r-cran-dbi

  GNU R package providing a generic database interface

• rec: r-bioc-snpstats

  BioConductor SnpMatrix and XSnpMatrix classes and methods

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-annotationhub

  GNU R client to access AnnotationHub resources

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-ggplot2

  implementation of the Grammar of Graphics

Hämta r-bioc-variantannotation

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	3.419,3 kbyte	4.819,0 kbyte	[filförteckning]
arm64	3.399,3 kbyte	4.787,0 kbyte	[filförteckning]
armel	3.387,1 kbyte	4.736,0 kbyte	[filförteckning]
armhf	3.388,9 kbyte	4.604,0 kbyte	[filförteckning]
i386	3.394,8 kbyte	4.832,0 kbyte	[filförteckning]
mips64el	3.406,0 kbyte	4.898,0 kbyte	[filförteckning]
mipsel	3.409,2 kbyte	4.859,0 kbyte	[filförteckning]
ppc64el	3.447,3 kbyte	5.039,0 kbyte	[filförteckning]
s390x	3.407,1 kbyte	4.867,0 kbyte	[filförteckning]