Пакунок: minimap2 (2.17+dfsg-12 and others)
Links for minimap2
Debian Resources:
Download Source Package minimap2:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
versatile pairwise aligner for genomic and spliced nucleotide sequences
Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.
Інші пакунки пов'язані з minimap2
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- dep: libc6 (>= 2.29)
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
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- dep: zlib1g (>= 1:1.1.4) [not arm64]
- Бібліотека стискання даних (виконавчий модуль)
- dep: zlib1g (>= 1:1.2.3.3) [arm64]
Завантажити minimap2
| Архітектура | Версія | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|---|
| amd64 | 2.17+dfsg-12+b3 | 354.9 kB | 467.0 kB | [список файлів] |
| arm64 | 2.17+dfsg-12+b3 | 346.9 kB | 451.0 kB | [список файлів] |
| armel | 2.17+dfsg-12+b3 | 365.9 kB | 506.0 kB | [список файлів] |
| armhf | 2.17+dfsg-12+b3 | 365.4 kB | 450.0 kB | [список файлів] |
| i386 | 2.17+dfsg-12+b3 | 386.1 kB | 574.0 kB | [список файлів] |
| mips64el | 2.17+dfsg-12+b3 | 375.1 kB | 526.0 kB | [список файлів] |
| mipsel | 2.17+dfsg-12+b3 | 388.0 kB | 549.0 kB | [список файлів] |
| ppc64el | 2.17+dfsg-12+b3 | 365.8 kB | 559.0 kB | [список файлів] |
| s390x | 2.17+dfsg-12+b3 | 367.9 kB | 523.0 kB | [список файлів] |