Paket: trf-examples (4.09.1-4)
Länkar för trf-examples
Debianresurser:
Hämta källkodspaketet trf:
Ansvariga:
Externa resurser:
- Hemsida [tandem.bu.edu]
Liknande paket:
locate and display tandem repeats in DNA sequences (examples)
A tandem repeat in DNA is two or more adjacent, approximate copies of a pattern of nucleotides. Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. In order to use the program, the user submits a sequence in FASTA format. There is no need to specify the pattern, the size of the pattern or any other parameter. The output consists of two files: a repeat table file and an alignment file. The repeat table, viewable in a web browser, contains information about each repeat, including its location, size, number of copies and nucleotide content. Clicking on the location indices for one of the table entries opens a second browser page that shows an alignment of the copies against a consensus pattern. The program is very fast, analyzing sequences on the order of .5Mb in just a few seconds. Submitted sequences may be of arbitrary length. Repeats with pattern size in the range from 1 to 2000 bases are detected.
This package contains the example data for trf.
Andra paket besläktade med trf-examples
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- enh: trf
- locate and display tandem repeats in DNA sequences
Hämta trf-examples
Arkitektur | Paketstorlek | Installerad storlek | Filer |
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all | 18,5 kbyte | 137,0 kbyte | [filförteckning] |