Pakket: trf-examples (4.09.1-4)
Verwijzigingen voor trf-examples
Debian bronnen:
Het bronpakket trf downloaden:
Beheerders:
Externe bronnen:
- Homepage [tandem.bu.edu]
Vergelijkbare pakketten:
locate and display tandem repeats in DNA sequences (examples)
A tandem repeat in DNA is two or more adjacent, approximate copies of a pattern of nucleotides. Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. In order to use the program, the user submits a sequence in FASTA format. There is no need to specify the pattern, the size of the pattern or any other parameter. The output consists of two files: a repeat table file and an alignment file. The repeat table, viewable in a web browser, contains information about each repeat, including its location, size, number of copies and nucleotide content. Clicking on the location indices for one of the table entries opens a second browser page that shows an alignment of the copies against a consensus pattern. The program is very fast, analyzing sequences on the order of .5Mb in just a few seconds. Submitted sequences may be of arbitrary length. Repeats with pattern size in the range from 1 to 2000 bases are detected.
This package contains the example data for trf.
Andere aan trf-examples gerelateerde pakketten
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- enh: trf
- locate and display tandem repeats in DNA sequences