Balík: r-cran-alakazam (0.3.0-1) [debports]

[ Zdroj:  ]

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

Ostatné balíky súvisiace s balíkom r-cran-alakazam

• dep: libc6 (>= 2.4)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc2 (>= 4.2.1)

  Balík nie je dostupný

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

• dep: r-api-3.5

  Balík nie je dostupný

• dep: r-base-core (>= 3.6.1-2)

  jadro GNU R na štatistické výpočty a grafický systém

Stiahnuť r-cran-alakazam

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
m68k (neoficiálny port)	1,706.4 kB	2,053.0 kB	[zoznam súborov]