Balík: pynast (1.2.2-4)

[ Zdroj: pynast  ]

alignment of short DNA sequences

The package provices a reimplementation of the Nearest Alignment Space Termination tool in Python. It was prepared for next generation sequencers.

Given a set of sequences and a template alignment, PyNAST will align the input sequences against the template alignment, and return a multiple sequence alignment which contains the same number of positions (or columns) as the template alignment. This facilitates the analysis of new sequences in the context of existing alignments, and additional data derived from existing alignments such as phylogenetic trees. Because any protein or nucleic acid sequences and template alignments can be provided, PyNAST is not limited to the analysis of 16s rDNA sequences.

Ostatné balíky súvisiace s balíkom pynast

• dep: libjs-jquery

  JavaScript library for dynamic web applications

• dep: libjs-underscore

  pomocná knižnica JavaScriptu na funkcionálne programovanie

• dep: python

  interaktívny vysokoúrovňový objektovo orientovaný jazyk (verzia python2)

  dep: python (<< 2.8)

  dep: python (>= 2.7)

• rec: blast2

  prechodový fiktívny balík na ncbi-blast+-legacy

• rec: clustalw

  globálne viacnásobné zarovnávanie sekvencií nukleotidov alebo peptidov

• rec: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• rec: muscle

  Multiple alignment program of protein sequences

• rec: python-mpi4py

  väzby štandardu (MPI Message Passing Interface)

• sug: uclust

  Balík nie je dostupný

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