Balík: parsnp (1.2+dfsg-5)

[ Zdroj: parsnp  ]

rapid core genome multi-alignment

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.

Ostatné balíky súvisiace s balíkom parsnp

• dep: fasttree

  phylogenetic trees from alignments of nucleotide or protein sequences

• dep: libc6 (>= 2.27)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  podporná knižnica GCC

• dep: libgomp1 (>= 4.9)

  podporná knižnica GCC OpenMP (GOMP)

• dep: libmuscle1 (>= 3.7+4565)

  multiple alignment library for protein sequences

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

• dep: mummer

  Efficient sequence alignment of full genomes

• dep: phipack

  PHI test and other tests of recombination

• dep: python

  interaktívny vysokoúrovňový objektovo orientovaný jazyk (verzia python2)

• dep: python-numpy

  Numerical Python pridáva schopnosti rýchlych polí do jazyka Python

• rec: python-dendropy

  DendroPy Phylogenetic Computing Library (Python 2)

Stiahnuť parsnp

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
i386	518.4 kB	920.0 kB	[zoznam súborov]