Package: parsnp (1.2+dfsg-5)
Links for parsnp
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- Homepage [harvest.readthedocs.org]
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rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
Other Packages Related to parsnp
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- dep: fasttree
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- dep: libc6 (>= 2.27)
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also a virtual package provided by libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
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- dep: libgomp1 (>= 4.9)
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- dep: libstdc++6 (>= 5.2)
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- dep: mummer
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- dep: phipack
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- dep: python-numpy
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- rec: python-dendropy
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Download parsnp
Architecture | Package Size | Installed Size | Files |
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i386 | 518.4 kB | 920.0 kB | [list of files] |