Balík: python-cogent (1.9-14)

[ Zdroj: python-cogent  ]

framework for genomic biology

PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for:

 * controlling third-party applications,
 * devising workflows; querying databases,
 * conducting novel probabilistic analyses of biological sequence
   evolution, and
 * generating publication quality graphics.

It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data.

Značky: Biológia: Proteins, Software Development: Python Development, Knižnice, Pole: field::biology, field::biology:bioinformatics, Implementované v: implemented-in::python, interface::commandline, Role: Vývojová knižnica, Program, Purpose: use::analysing, use::comparing

Ostatné balíky súvisiace s balíkom python-cogent

• dep: libc6 (>= 2.4)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: python

  interaktívny vysokoúrovňový objektovo orientovaný jazyk (verzia python2)

  dep: python (<< 2.8)

  dep: python (>= 2.7~)

• dep: python-matplotlib

  systém v Pythone na vykresľovanie v štýle podobnom Matlabu

• dep: python-numpy (>= 1:1.16.0~rc1)

  Numerical Python pridáva schopnosti rýchlych polí do jazyka Python

• dep: python-numpy-abi9

  virtuálny balík poskytovaný balíkom python-numpy

• rec: blast2

  prechodový fiktívny balík na ncbi-blast+-legacy

• rec: cd-hit

  suite of programs designed to quickly group sequences

• rec: clearcut

  extremely efficient phylogenetic tree reconstruction

• rec: dialign

  Segment-based multiple sequence alignment

• rec: muscle

  Multiple alignment program of protein sequences

• sug: cdbfasta

  Constant DataBase indexing and retrieval tools for multi-FASTA files

• sug: clustalw

  globálne viacnásobné zarovnávanie sekvencií nukleotidov alebo peptidov

• sug: fasttree

  phylogenetic trees from alignments of nucleotide or protein sequences

• sug: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• sug: mothur

  sequence analysis suite for research on microbiota

• sug: parsinsert

  Parsimonious Insertion of unclassified sequences into phylogenetic trees

• sug: python-cogent-doc

  docs for python-cogent

• sug: rdp-classifier

  extensible sequence classifier for fungal lsu, bacterial and archaeal 16s

• sug: rtax

  Classification of sequence reads of 16S ribosomal RNA gene

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