Package: gmap (2024-10-10+ds-1) [debports]
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External Resources:
- Homepage [research-pub.gene.com]
Similar packages:
spliced and SNP-tolerant alignment for mRNA and short reads
This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of
* known splice sites and identify novel splice sites. * known single-nucleotide polymorphisms (SNPs).GSNAP can align bisulfite-treated DNA.
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Download gmap
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
sh4 (unofficial port) | 5,827.1 kB | 48,639.0 kB | [list of files] |