Пакет: r-bioc-annotationhub (3.14.0+dfsg-1)

[ Источник: r-bioc-annotationhub  ]

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GNU R client to access AnnotationHub resources

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Другие пакеты, относящиеся к r-bioc-annotationhub

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  Пакет недоступен

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  виртуальный пакет, предоставляемый r-bioc-biocgenerics

• dep: r-bioc-annotationdbi (>= 1.31.19)

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• dep: r-bioc-biocfilecache (>= 1.5.1)

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• dep: r-bioc-biocgenerics (>= 0.15.10)

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• dep: r-bioc-biocversion

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• dep: r-bioc-s4vectors

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• dep: r-cran-curl

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• dep: r-cran-dplyr

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• dep: r-cran-rsqlite

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• dep: r-cran-yaml

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• sug: r-bioc-biocstyle

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• sug: r-bioc-biostrings

  GNU R string objects representing biological sequences

• sug: r-bioc-ensembldb

  GNU R utilities to create and use an Ensembl based annotation database

• sug: r-bioc-experimenthub

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• sug: r-bioc-genomeinfodb

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• sug: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• sug: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• sug: r-bioc-rsamtools

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• sug: r-bioc-rtracklayer

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• sug: r-bioc-summarizedexperiment

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• sug: r-bioc-txdbmaker

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• sug: r-bioc-variantannotation

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• sug: r-cran-knitr

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• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-runit

  GNU R package providing unit testing framework

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