Пакет: optimir (1.2-1)

[ Источник: optimir  ]

Integrating genetic variations in miRNA alignment

OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression.

OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, & study the impact of genetic variations on polymiRs' expression.

Другие пакеты, относящиеся к optimir

• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: cutadapt

  Clean biological sequences from high-throughput sequencing reads

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• rec: r-cran-ggplot2

  implementation of the Grammar of Graphics

• rec: r-cran-gridextra

  GNU R package with extensions for the grid package

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