[ Source: optimir ]
Package: optimir (1.2-1)
Links for optimir
Debian Resources:
Download Source Package optimir:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
Integrating genetic variations in miRNA alignment
OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression.
OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, & study the impact of genetic variations on polymiRs' expression.
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- dep: bowtie2
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- dep: python3
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- dep: python3-biopython
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: r-cran-ggplot2
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- rec: r-cran-gridextra
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Download optimir
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 1,003.1 kB | 7,403.0 kB | [list of files] |