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Package: stringtie (2.2.1+ds-3 and others) [debports]

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assemble short RNAseq reads to transcripts

The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.

StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.

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Download stringtie

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 2.2.1+ds-3+b1 377.7 kB1,263.0 kB [list of files]