Package: pizzly (0.37.3+ds-9) [debports]

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Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

Other Packages Related to pizzly

• dep: kallisto

  near-optimal RNA-Seq quantification

• dep: libc6.1 (>= 2.34)

  GNU Biblioteca C: Bibliotecas compartilhadas
  also a virtual package provided by libc6.1-udeb

• dep: libgcc-s1 (>= 3.4)

  Biblioteca de suporte GCC

• dep: libstdc++6 (>= 12.2.0-9)

  Biblioteca C++ padrão da GNU v3

• dep: python3

  linguagem orientada a objetos de alto nível e interativa (versão python3 padrão)

• dep: zlib1g (>= 1:1.1.4)

  biblioteca de compressão - runtime (tempo de execução)

• rec: python3-h5py

  general-purpose Python interface to hdf5

Download pizzly

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Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	271.7 kB	1,059.0 kB	[list of files]