パッケージ: pizzly (0.37.3+ds-9) [debports]
Identifies gene fusions in RNA sequencing data
For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.
Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.
その他の pizzly 関連パッケージ
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- dep: kallisto
- near-optimal RNA-Seq quantification
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- dep: libc6.1 (>= 2.34)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6.1-udeb
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- dep: libgcc-s1 (>= 3.4)
- GCC 共有ライブラリ
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- dep: libstdc++6 (>= 12.2.0-9)
- GNU 標準 C++ ライブラリ v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.1.4)
- 圧縮ライブラリ - ランタイム
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- rec: python3-h5py
- general-purpose Python interface to hdf5