Package: nanopolish (0.14.0-1 and others) [debports]
Links for nanopolish
Debian Resources:
Download Source Package :
Not foundMaintainers:
External Resources:
- Homepage [github.com]
Similar packages:
consensus caller for nanopore sequencing data
Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.
Other Packages Related to nanopolish
|
|
|
|
-
- dep: libc6.1 (>= 2.34)
- GNU Biblioteca C: Bibliotecas compartilhadas
also a virtual package provided by libc6.1-udeb
-
- dep: libgcc-s1 (>= 3.4)
- Biblioteca de suporte GCC
-
- dep: libgomp1 (>= 6)
- biblioteca de suporte ao GCC OpenMP (GOMP)
-
- dep: libhdf5-103-1t64
- HDF5 C runtime files - serial version
-
- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
-
- dep: libslow5-0t64 (>= 0.5.1)
- library for reading & writing SLOW5 files
-
- dep: libstdc++6 (>= 13.1)
- Biblioteca C++ padrão da GNU v3
-
- dep: libstreamvbyte0 (>= 0.4.1)
- fast integer compression in C using the StreamVByte codec
-
- dep: perl
- Linguagem de extração e relatórios prática de Larry Wall
-
- dep: python3
- linguagem orientada a objetos de alto nível e interativa (versão python3 padrão)
-
- dep: zlib1g (>= 1:1.1.4)
- biblioteca de compressão - runtime (tempo de execução)
-
- rec: python3-biopython
- Python3 library for bioinformatics
-
- rec: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
Download nanopolish
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
alpha (unofficial port) | 0.14.0-1+b1 | 2,133.7 kB | 9,606.0 kB | [list of files] |