Package: gubbins (2.3.5-1) [debports]

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phylogenetic analysis of genome sequences

Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.

Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.

Other Packages Related to gubbins

• dep: fasttree

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• dep: libc6.1 (>= 2.29)

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• dep: python3

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• dep: python3-biopython

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• dep: python3-dendropy

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• dep: python3-nose

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• dep: python3-reportlab

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• dep: raxml

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• dep: zlib1g (>= 1:1.1.4)

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Download gubbins

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	53.5 kB	201.0 kB	[list of files]