Pacote: zalign (0.9.1-4)

[ Fonte: zalign  ]

parallel local alignment of biological sequences

zAlign is a local sequence aligner, especially intended for use with large biological DNA sequences, with more than 1Mbp (Millions of base pairs). It uses the Smith-Waterman exact algorithm with affine gap cost function to perform this task.

zAlign can be used both in distributed (clusters, for example) or standalone environments. Currently it has been tested on Linux and Sun Solaris, using both the MPICH (http://www.mcs.anl.gov/research/projects/mpi/mpich1/) and OpenMPI (http://www.open-mpi.org/) implementations. Ports for other Unix-like environments are highly considered.

Outros pacotes relacionados a zalign

• dep: libc6 (>= 2.14) [amd64]

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:3.0) [não armhf]

  Biblioteca de suporte GCC

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libopenmpi3

  high performance message passing library -- shared library

• dep: libstdc++6 (>= 4.9)

  Biblioteca C++ padrão da GNU v3

Download de zalign

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	47.1 kB	279.0 kB	[lista de arquivos]
arm64	44.7 kB	263.0 kB	[lista de arquivos]
armhf	26.1 kB	97.0 kB	[lista de arquivos]
i386	47.9 kB	265.0 kB	[lista de arquivos]