Pacote: plasmidseeker (1.0+dfsg-1)

[ Fonte: plasmidseeker  ]

identification of known plasmids from whole-genome sequencing reads

PlasmidSeeker is a k-mer based program for the identification of known plasmids from bacterial whole genome sequencing reads.

PlasmidSeeker that enables the detection of plasmids from bacterial WGS data without read assembly. The PlasmidSeeker algorithm is based on k-mers and uses k-mer abundance to distinguish between plasmid and bacterial sequences. The performance of PlasmidSeeker was tested on a set of simulated and real bacterial WGS samples, resulting in 100% sensitivity and 99.98% specificity.

Outros pacotes relacionados a plasmidseeker

• dep: genometester (>= 4.0+git20180508.a9c14a6+dfsg)

  toolkit for performing set operations on k-mer lists

Download de plasmidseeker

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	23.9 kB	90.0 kB	[lista de arquivos]
arm64	23.9 kB	90.0 kB	[lista de arquivos]
armhf	23.9 kB	90.0 kB	[lista de arquivos]
i386	23.9 kB	90.0 kB	[lista de arquivos]