Pacote: libssw0 (1.1-2)

[ Fonte: libssw  ]

fast SIMD parallelized implementation of the Smith-Waterman algorithm

SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. The library can do protein and genome alignment directly. Current version of this implementation is ~50 times faster than an ordinary Smith-Waterman. It can return the Smith-Waterman score, alignment location and traceback path (cigar) of the optimal alignment accurately; and return the sub-optimal alignment score and location heuristically.

Etiquetas: Função: Biblioteca compartilhada

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Download de libssw0

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Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	16.1 kB	52.0 kB	[lista de arquivos]