Pacote: concavity (0.1+dfsg.1-4)

[ Fonte: concavity  ]

predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

Outros pacotes relacionados a concavity

• dep: libc6 (>= 2.14) [amd64]

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:3.0) [não armhf]

  Biblioteca de suporte GCC

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libstdc++6 (>= 5)

  Biblioteca C++ padrão da GNU v3

• sug: conservation-code

  protein sequence conservation scoring tool

• sug: pymol

  sistema de gráficos de moléculas

Download de concavity

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	289.1 kB	582.0 kB	[lista de arquivos]
arm64	277.1 kB	554.0 kB	[lista de arquivos]
armhf	265.7 kB	422.0 kB	[lista de arquivos]
i386	302.6 kB	629.0 kB	[lista de arquivos]