Paket: concavity (0.1+dfsg.1-4)

[ Källkod: concavity  ]

predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

Andra paket besläktade med concavity

• dep: libc6 (>= 2.14) [amd64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:3.0) [ej armhf]

  GCC stödbibliotek

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libstdc++6 (>= 5)

  GNU standardbibliotek v3 för C++

• sug: conservation-code

  protein sequence conservation scoring tool

• sug: pymol

  Molecular Graphics System

Hämta concavity

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	289,1 kbyte	582,0 kbyte	[filförteckning]
arm64	277,1 kbyte	554,0 kbyte	[filförteckning]
armhf	265,7 kbyte	422,0 kbyte	[filförteckning]
i386	302,6 kbyte	629,0 kbyte	[filförteckning]